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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 21.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 12.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 5.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 21.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 31.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 19.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 21.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 33.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1146.9
Min RPKM: 18.8
Std RPKM: 182.3
Median RPKM: 164.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1146.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
891.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
789.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
660.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
567.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
526.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
518.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
503.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
464.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
459.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
447.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
440.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
388.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
364.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
356.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
355.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
335.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
333.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
332.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
330.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
321.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
316.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
315.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
312.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
292.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
285.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
278.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
269.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
266.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
265.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
263.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
261.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
259.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
258.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
255.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
254.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
246.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
242.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
234.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
234.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
220.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
217.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
213.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
210.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
203.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
202.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
201.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
200.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
197.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
193.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
193.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
184.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
183.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
181.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
179.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
176.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
175.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
169.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
165.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
164.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
159.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
149.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
144.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
141.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
133.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
131.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
122.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
122.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
121.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
116.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
106.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
101.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
100.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
97.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
96.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
95.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
93.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
93.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
93.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
91.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
91.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
89.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
87.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
85.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
76.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
74.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
74.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
73.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
71.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
69.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
66.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
66.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
64.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
64.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
58.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
58.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
57.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
52.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
49.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
46.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
46.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
45.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
44.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
42.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
41.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
40.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
38.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
38.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
33.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
32.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
31.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
31.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
31.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
30.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
29.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
26.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
22.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
20.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
18.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.