Fields »
ABOUTMENU
HELP
NEWS
XBP1
COLON - Expression summary
RNA expressioni
HPA:200.7TPM
GTEx:55.4RPKM
FANTOM5:244.7Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 200.7
overview Male, age 54 Sample 1
TPM: 350.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 168.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 193
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 90.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 167.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 195
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 182
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 157.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 262.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 281.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 214.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 168.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 177.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 55.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 30.0
Samples: 149

Max RPKM: 92.3
Min RPKM: 9.4
Std RPKM: 14.7
Median RPKM: 26.3
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 92.3
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 85.9
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 82.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 75.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 69.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 66.0
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 59.0
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 56.3
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 55.4
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 52.2
Show all
Colon - Transverse
RPKM: 74.7
Samples: 196

Max RPKM: 287.3
Min RPKM: 15.9
Std RPKM: 39.6
Median RPKM: 67.3
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 287.3
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 211.7
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 190.5
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 165.5
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 163.1
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 162.9
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 157.6
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 154.4
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 154.2
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 152.6
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 244.7
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 225.8
FF:10014-101C5 62,83,84 years, mixed 244.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.