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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 709.7
Min RPKM: 254.3
Std RPKM: 86.7
Median RPKM: 388.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
709.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
605.6
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
594.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
581.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
577.8
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
569.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
548.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
538.0
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
534.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
515.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
506.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
504.0
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
494.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
490.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
487.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
484.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
482.8
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
482.8
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
479.0
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
469.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
468.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
464.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
456.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
452.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
451.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
447.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
446.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
442.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
442.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
441.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
440.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
438.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
438.2
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
436.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
436.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
423.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
422.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
415.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
414.2
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
408.5
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
408.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
407.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
403.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
403.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
403.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
402.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
390.0
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
389.9
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
386.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
385.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
372.7
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
372.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
371.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
368.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
368.4
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
367.2
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
367.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
367.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
366.0
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
363.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
361.5
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
361.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
358.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
356.7
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
349.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
348.5
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
348.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
347.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
347.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
345.3
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
336.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
336.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
332.6
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
329.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
329.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
325.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
323.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
321.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
320.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
320.5
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
318.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
317.5
GTEX-S341-1226-SM-4AD5S
40-49 years, female
314.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
313.8
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
310.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
308.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
307.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
307.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
301.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
300.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
288.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
282.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
282.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
263.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
263.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
254.3
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.