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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 20161.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 30692.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 23207
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 26151
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 32792.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 24386.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 40217.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 24869.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 23993.0
Min RPKM: 702.6
Std RPKM: 6626.4
Median RPKM: 10349.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
23993.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
23814.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
23539.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
23476.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
23191.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
23050.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
22551.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
22453.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
22374.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
21919.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
21574.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
21095.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
21087.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
20823.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
20821.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
20491.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
20203.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
20185.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
20152.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
20072.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
19872.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
19321.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
19312.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
19182.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
18737.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
18621.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
18504.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
18291.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
18200.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
18069.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
18001.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
17833.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
17569.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
17408.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
17213.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
16537.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
16487.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
15989.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
15699.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
15347.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
14995.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
14542.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
14365.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
14127.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
13760.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
13554.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
13530.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
13440.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
13422.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
13378.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
13363.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
13218.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
13208.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
12277.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
11535.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
11344.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
11256.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
11128.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
10728.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
10349.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
10311.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
10309.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
9979.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
9933.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
9771.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
9630.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
9437.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
9005.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
8916.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
8821.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
8773.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
8757.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
8555.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
8532.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
8284.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
8038.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
7680.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
7650.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
7638.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
7482.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
7352.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
7194.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
6792.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
6774.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
6720.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
6705.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
6662.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
6624.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
6315.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
5501.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
5468.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
5336.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
5150.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
5021.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
4924.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
4703.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
4589.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
4424.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
4306.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
4182.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
4121.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
4113.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
3960.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
3955.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
3946.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
3899.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
3883.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
3859.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
3646.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
3388.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
3286.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
3259.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2757.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
2721.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
2676.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
2564.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
2265.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1928.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
702.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.