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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 781.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 942
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 495.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 388.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 505.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 843.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 901.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1534.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1613.1
Min RPKM: 1.1
Std RPKM: 388.7
Median RPKM: 271.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1613.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1563.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1562.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
1494.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
1192.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1192.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1102.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1100.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1092.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1023.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1019.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
998.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
992.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
956.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
939.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
896.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
865.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
863.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
852.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
843.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
767.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
735.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
722.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
698.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
696.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
692.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
690.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
687.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
664.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
620.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
592.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
577.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
567.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
559.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
529.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
529.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
524.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
472.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
444.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
432.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
429.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
422.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
406.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
401.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
393.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
376.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
375.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
368.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
359.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
356.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
327.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
321.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
304.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
304.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
297.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
296.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
287.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
279.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
276.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
271.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
265.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
258.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
254.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
253.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
248.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
240.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
234.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
229.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
214.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
213.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
212.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
209.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
208.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
207.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
185.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
183.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
172.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
159.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
158.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
158.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
157.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
128.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
128.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
119.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
114.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
110.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
90.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
81.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
79.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
73.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
61.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
60.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
57.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
55.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
51.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
49.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
47.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
47.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
45.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
44.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
43.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
41.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
40.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
37.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
36.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
35.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
25.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
23.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
19.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
19.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
15.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
12.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
9.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
5.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
4.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
3.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
3.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
1.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.