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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 512.8
Min RPKM: 10.1
Std RPKM: 110.7
Median RPKM: 116.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
512.8
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
435.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
432.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
341.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
339.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
329.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
323.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
314.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
309.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
307.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
297.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
289.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
285.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
281.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
272.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
259.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
258.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
245.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
242.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
241.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
238.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
228.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
225.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
224.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
218.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
213.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
205.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
202.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
193.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
186.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
172.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
170.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
168.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
160.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
155.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
153.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
146.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
145.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
145.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
144.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
144.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
143.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
137.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
121.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
110.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
106.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
104.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
103.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
102.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
102.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
101.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
101.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
100.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
93.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
90.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
87.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
86.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
83.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
81.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
79.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
75.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
73.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
72.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
71.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
56.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
48.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
48.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
46.5
GTEX-1192X-2526-SM-59868
50-59 years, male
45.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
44.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
42.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
41.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
40.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
39.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
38.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
37.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
37.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
35.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
35.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
34.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
32.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
31.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
30.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
24.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
22.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
20.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
18.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
10.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.