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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 2732
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 3819.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2518
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3133.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3592.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2199.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2996.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4650.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 473.6
Min RPKM: 20.2
Std RPKM: 92.2
Median RPKM: 124.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
473.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
422.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
404.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
364.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
359.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
353.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
325.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
311.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
301.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
299.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
280.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
279.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
273.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
267.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
265.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
253.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
250.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
250.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
235.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
230.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
224.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
222.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
220.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
217.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
215.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
214.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
214.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
212.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
211.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
211.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
207.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
198.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
190.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
189.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
185.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
184.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
183.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
179.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
178.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
173.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
170.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
167.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
166.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
163.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
152.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
151.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
150.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
149.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
149.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
148.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
147.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
145.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
144.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
142.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
135.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
134.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
133.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
129.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
126.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
124.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
121.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
117.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
116.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
114.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
112.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
111.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
110.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
109.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
103.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
102.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
101.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
101.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
99.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
97.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
97.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
94.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
91.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
90.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
90.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
89.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
89.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
89.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
89.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
88.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
88.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
87.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
86.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
81.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
79.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
77.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
76.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
73.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
71.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
70.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
70.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
69.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
68.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
66.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
62.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
62.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
61.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
60.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
58.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
58.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
57.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
56.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
56.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
55.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
55.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
55.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
51.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
46.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
44.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
42.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
40.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
39.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
33.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
24.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
20.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.