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COLON - Expression summary
RNA expressioni
HPA:14.2TPM
GTEx:6.2RPKM
FANTOM5:33.9Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 14.2
overview Male, age 54 Sample 1
TPM: 9.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 15.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 25.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 27.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 18.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 17
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 13.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 6.2
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 7.0
Samples: 149

Max RPKM: 21.7
Min RPKM: 1.8
Std RPKM: 3.7
Median RPKM: 6.1
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 21.7
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 20.5
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 16.5
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 15.7
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 15.5
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 14.6
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 14.6
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 13.4
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 13.2
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 13.1
Show all
Colon - Transverse
RPKM: 5.6
Samples: 196

Max RPKM: 31.0
Min RPKM: 0.9
Std RPKM: 4.9
Median RPKM: 4.0
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 31.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 28.3
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 27.9
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 22.9
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 20.7
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 19.1
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 18.3
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 17.7
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 17.3
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 15.8
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 33.9
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 51.2
FF:10014-101C5 62,83,84 years, mixed 33.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.