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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA052833
Neuronal cells
Low
Glial cells
Not detected
Neuronal projections
Low
Synapses
Low
Antibody stainingi
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 273.0
Min RPKM: 3.5
Std RPKM: 74.5
Median RPKM: 95.3
GTEX-WHSE-0011-R5A-SM-3P5ZO
20-29 years, male
273.0
GTEX-T2IS-0011-R5A-SM-32QP4
20-29 years, female
263.1
GTEX-131YS-0011-R5b-SM-5K7YB
60-69 years, female
262.5
GTEX-T5JC-0011-R5A-SM-32PLK
20-29 years, male
247.1
GTEX-Q2AG-0011-R5A-SM-2HMJH
40-49 years, female
234.0
GTEX-S7SE-0011-R5A-SM-2XCDA
50-59 years, male
233.4
GTEX-11OF3-0011-R5a-SM-57WB4
60-69 years, male
231.1
GTEX-UTHO-0011-R5A-SM-3GIJD
60-69 years, male
225.4
GTEX-T6MN-0011-R5A-SM-32QPD
50-59 years, male
224.1
GTEX-13G51-0011-R5a-SM-5L3EB
60-69 years, male
222.8
GTEX-P44H-0011-R5A-SM-2XCEX
40-49 years, male
215.0
GTEX-12ZZY-0011-R5a-SM-5EGL9
60-69 years, male
210.4
GTEX-145MH-0011-R5a-SM-5P9JT
50-59 years, male
209.1
GTEX-13O3Q-0011-R5b-SM-5P9H4
50-59 years, male
208.2
GTEX-R55E-0011-R5A-SM-2TC5N
20-29 years, male
207.2
GTEX-12WSC-0011-R5b-SM-5CVNS
50-59 years, male
205.8
GTEX-QVJO-0011-R5A-SM-2S1QM
60-69 years, female
202.6
GTEX-1313W-0011-R5b-SM-5L3EP
50-59 years, female
201.5
GTEX-1399T-0011-R5b-SM-5IJDK
60-69 years, male
193.6
GTEX-ZUA1-0011-R5b-SM-51MTG
40-49 years, male
189.4
GTEX-13X6K-0011-R5b-SM-5PNUE
60-69 years, female
188.3
GTEX-WL46-0011-R5A-SM-3LK6V
50-59 years, male
186.7
GTEX-13VXU-0011-R5a-SM-5O9D7
50-59 years, male
185.4
GTEX-13X6J-0011-R5b-SM-5PNWT
50-59 years, male
182.1
GTEX-13SLX-0011-R5a-SM-5O9BV
50-59 years, female
178.8
GTEX-12WSF-0011-R5a-SM-5HL8K
70-79 years, male
176.3
GTEX-14ABY-0011-R5b-SM-5SI7B
50-59 years, male
174.9
GTEX-ZAB4-0011-R5a-SM-4SOKC
40-49 years, male
164.3
GTEX-14BIM-0011-R5b-SM-5S2RM
60-69 years, female
161.8
GTEX-11NV4-0011-R5a-SM-5NQ88
60-69 years, male
160.8
GTEX-13RTJ-0011-R5a-SM-5P9HR
60-69 years, male
158.8
GTEX-145LS-0011-R5a-SM-5SI65
60-69 years, female
153.1
GTEX-N7MS-0011-R5a-SM-2HMK8
60-69 years, male
148.7
GTEX-WVLH-0011-R5A-SM-3MJFW
50-59 years, male
140.7
GTEX-Z93S-0011-R5b-SM-4RGNI
50-59 years, male
139.7
GTEX-WZTO-0011-R5B-SM-3NMC5
40-49 years, male
137.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y
60-69 years, male
136.4
GTEX-X585-0011-R5A-SM-46MVI
50-59 years, male
136.4
GTEX-TSE9-0011-R5A-SM-3DB7J
60-69 years, female
133.3
GTEX-PVOW-0011-R5A-SM-32PL7
40-49 years, male
130.5
GTEX-13N1W-0011-R5b-SM-5MR5Q
70-79 years, male
129.7
GTEX-RU72-0011-R5A-SM-2TF6U
50-59 years, female
129.7
GTEX-WWYW-0011-R5A-SM-3NB3E
50-59 years, female
126.7
GTEX-13O3O-0011-R5b-SM-5KM44
60-69 years, female
122.9
GTEX-11GSP-0011-R5a-SM-57WBE
60-69 years, female
121.0
GTEX-N7MT-0011-R5a-SM-2I3G6
60-69 years, female
116.4
GTEX-13CZV-0011-R5a-SM-5K7XA
60-69 years, male
114.5
GTEX-13FXS-0011-R5b-SM-5LZYE
50-59 years, male
113.8
GTEX-13OVL-0011-R5b-SM-5L3FU
50-59 years, male
113.8
GTEX-13FHO-0011-R5b-SM-5LZZ3
60-69 years, male
112.8
GTEX-11H98-0011-R5b-SM-57WCF
50-59 years, male
112.7
GTEX-132Q8-0011-R5a-SM-5IJDM
60-69 years, male
110.7
GTEX-13JUV-0011-R5a-SM-5LZY5
40-49 years, female
110.6
GTEX-13FLW-0011-R5a-SM-5LZX6
50-59 years, male
107.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M
60-69 years, male
106.7
GTEX-139TT-0011-R5b-SM-5K7W8
60-69 years, male
101.5
GTEX-13OW6-0011-R5a-SM-5O9BK
50-59 years, male
97.9
GTEX-13X6I-0011-R5a-SM-5PNWW
60-69 years, male
95.8
GTEX-Y8DK-0011-R5B-SM-4RTW6
60-69 years, male
95.3
GTEX-13OW7-0011-R5b-SM-5O9DM
50-59 years, male
89.9
GTEX-12WSD-0011-R5b-SM-5CVNG
60-69 years, female
84.0
GTEX-13S7M-0011-R5b-SM-5P9HS
60-69 years, female
84.0
GTEX-13OW8-0011-R5b-SM-5L3FQ
60-69 years, male
83.3
GTEX-ZE9C-0011-R5a-SM-5EGLO
60-69 years, male
81.8
GTEX-13NYS-0011-R5a-SM-5MR4D
60-69 years, male
80.3
GTEX-RVPU-0011-R5A-SM-2XCAD
50-59 years, male
76.4
GTEX-13NYB-0011-R5a-SM-5MR45
40-49 years, male
74.4
GTEX-OHPN-0011-R5A-SM-2I5FF
60-69 years, female
73.0
GTEX-13OW5-0011-R5b-SM-5L3FR
60-69 years, male
70.5
GTEX-13FLV-0011-R5a-SM-5LZWT
50-59 years, male
67.4
GTEX-NL4W-0011-R5a-SM-2I3GD
50-59 years, male
66.1
GTEX-ZE7O-0011-R5a-SM-57WBO
50-59 years, female
65.8
GTEX-RVPV-0011-R5A-SM-2TF69
60-69 years, male
65.3
GTEX-13OVH-0011-R5b-SM-5KM4L
70-79 years, male
64.4
GTEX-XOTO-0011-R5A-SM-4B657
50-59 years, male
55.6
GTEX-YFC4-0011-R5a-SM-4RGLR
40-49 years, female
52.9
GTEX-ZXG5-0011-R5b-SM-57WBN
60-69 years, male
50.4
GTEX-12WSB-0011-R5b-SM-5GU67
60-69 years, female
50.0
GTEX-NL3H-0011-R5a-SM-2I3GB
60-69 years, male
48.8
GTEX-12ZZX-0011-R5a-SM-5HL89
40-49 years, female
48.0
GTEX-XMD1-0011-R5A-SM-4AT47
60-69 years, male
47.7
GTEX-14BIN-0011-R5b-SM-5SI78
50-59 years, female
47.1
GTEX-12ZZW-0011-R5a-SM-5DUVN
50-59 years, male
46.8
GTEX-QMR6-0011-R5A-SM-32PKT
50-59 years, male
42.9
GTEX-13SLW-0011-R5b-SM-5SI6Z
70-79 years, male
40.7
GTEX-OXRN-0011-R5A-SM-2I5EF
50-59 years, male
39.5
GTEX-13JVG-0011-R5a-SM-5MR4O
60-69 years, male
36.8
GTEX-NPJ8-0011-R5a-SM-2HMJY
40-49 years, male
34.6
GTEX-13CIG-0011-R5b-SM-5L3F2
50-59 years, male
33.8
GTEX-13OVJ-0011-R5a-SM-5P9H7
50-59 years, female
32.8
GTEX-12WSA-0011-R5b-SM-5GU5I
60-69 years, male
32.6
GTEX-ZVZQ-0011-R5b-SM-57WDC
60-69 years, female
31.8
GTEX-PWO3-0011-R5A-SM-2I5EZ
60-69 years, female
29.7
GTEX-ZF28-0011-R5a-SM-4WWCZ
60-69 years, male
27.6
GTEX-144GO-0011-R5a-SM-5PNUR
60-69 years, male
27.5
GTEX-13PVQ-0011-R5b-SM-5O9DI
50-59 years, male
23.9
GTEX-ZVT3-0011-R5a-SM-51MSI
60-69 years, female
21.4
GTEX-X4XX-0011-R5A-SM-46MWN
60-69 years, male
20.3
GTEX-YJ89-0011-R5a-SM-4V6GM
60-69 years, male
19.1
GTEX-13PLJ-0011-R5a-SM-5O9BG
60-69 years, female
15.7
GTEX-X261-0011-R5A-SM-3NMB4
50-59 years, male
15.5
GTEX-11WQC-0011-R5a-SM-5BC74
60-69 years, male
15.4
GTEX-144GL-0011-R5b-SM-5PNUJ
50-59 years, male
14.9
GTEX-NPJ7-0011-R5a-SM-33HBK
60-69 years, female
14.8
GTEX-ZV68-0011-R5a-SM-4YCDW
50-59 years, female
14.2
GTEX-13112-0011-R5b-SM-5DUV8
50-59 years, male
13.7
GTEX-12WSH-0011-R5b-SM-5P9F3
50-59 years, male
10.5
GTEX-139TS-0011-R5b-SM-5J2MZ
60-69 years, male
9.8
GTEX-1477Z-0011-R5b-SM-5PNUO
60-69 years, male
9.3
GTEX-13FHP-0011-R5b-SM-5LZY2
50-59 years, male
8.7
GTEX-1445S-0011-R5a-SM-5PNUS
60-69 years, male
7.7
GTEX-S7PM-0011-R5A-SM-3NM8G
60-69 years, male
7.1
GTEX-13NZA-0011-R5b-SM-5KM4K
60-69 years, male
6.3
GTEX-11UD1-0011-R5b-SM-5P9FP
40-49 years, female
5.1
GTEX-13CF2-0011-R5a-SM-5LZWS
60-69 years, male
4.7
GTEX-139T8-0011-R5b-SM-5J1MO
60-69 years, male
3.9
GTEX-145MG-0011-R5b-SM-5S2VU
50-59 years, male
3.5
Show all
CAUDATE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.