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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 730.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 768.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 874.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1398.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 985.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 914.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 412.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1621.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 800.2
Min RPKM: 3.6
Std RPKM: 160.5
Median RPKM: 172.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
800.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
643.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
535.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
526.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
494.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
489.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
486.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
480.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
477.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
465.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
464.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
458.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
453.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
418.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
410.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
366.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
366.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
358.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
357.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
353.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
351.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
343.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
337.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
335.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
329.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
329.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
325.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
325.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
319.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
317.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
305.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
298.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
292.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
288.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
287.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
283.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
282.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
280.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
259.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
257.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
254.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
252.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
246.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
238.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
237.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
236.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
231.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
204.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
202.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
198.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
193.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
191.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
187.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
186.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
185.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
181.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
179.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
177.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
173.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
172.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
172.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
166.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
164.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
163.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
154.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
141.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
138.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
135.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
125.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
125.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
115.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
113.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
112.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
111.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
105.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
103.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
99.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
97.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
95.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
92.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
89.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
87.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
81.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
76.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
73.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
70.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
67.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
66.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
64.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
60.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
57.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
56.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
56.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
51.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
50.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
50.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
48.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
47.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
44.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
42.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
41.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
37.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
32.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
31.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
30.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
25.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
24.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
20.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
17.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
15.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
14.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
12.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
11.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
11.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
11.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
6.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
6.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
3.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.