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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 216.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 83.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 336
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 107.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 283.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 425.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 34.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 108.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3294.8
Min RPKM: 1.4
Std RPKM: 467.4
Median RPKM: 162.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
3294.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
2296.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1660.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1378.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1370.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1258.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1224.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1028.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
986.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
978.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
960.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
944.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
802.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
684.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
649.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
635.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
617.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
609.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
607.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
603.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
533.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
513.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
502.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
496.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
494.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
457.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
456.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
434.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
433.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
429.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
421.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
413.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
409.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
392.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
372.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
370.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
367.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
353.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
348.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
346.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
322.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
320.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
302.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
281.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
268.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
267.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
253.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
252.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
248.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
246.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
242.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
238.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
201.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
196.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
183.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
177.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
169.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
164.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
163.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
162.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
152.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
143.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
139.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
137.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
133.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
133.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
131.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
130.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
129.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
122.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
122.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
112.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
105.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
104.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
104.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
103.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
98.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
91.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
89.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
87.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
86.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
86.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
78.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
77.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
74.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
72.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
71.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
66.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
65.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
64.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
60.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
51.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
50.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
50.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
42.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
41.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
40.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
32.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
31.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
30.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
29.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
27.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
24.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
22.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
21.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
20.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
19.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
17.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
15.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
12.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
12.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
9.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
9.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
9.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
7.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
7.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
6.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.