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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 754.0
Min RPKM: 0.6
Std RPKM: 162.4
Median RPKM: 177.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
754.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
604.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
563.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
500.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
493.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
470.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
468.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
465.6
GTEX-13O61-1326-SM-5KM31
60-69 years, male
433.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
419.6
GTEX-1122O-1326-SM-5H11F
60-69 years, female
418.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
411.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
409.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
406.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
384.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
334.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
327.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
326.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
324.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
314.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
309.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
304.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
299.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
298.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
295.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
280.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
279.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
275.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
262.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
261.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
258.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
257.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
256.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
239.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
233.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
230.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
217.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
212.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
207.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
202.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
196.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
184.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
183.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
183.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
171.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
167.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
163.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
157.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
154.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
148.2
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
142.2
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
136.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
130.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
130.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
123.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
117.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
112.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
111.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
106.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
106.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
101.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
100.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
98.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
97.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
94.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
89.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
77.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
73.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
48.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
43.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
41.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
37.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
29.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
21.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
19.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
18.9
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
16.8
GTEX-1192X-2526-SM-59868
50-59 years, male
10.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
9.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
8.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
7.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
6.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
6.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
3.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
3.6
GTEX-117YX-0326-SM-5GICL
50-59 years, male
2.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.