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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 536.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 310
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 374.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 12.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 7.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 644.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 49.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 332.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1836.4
Min RPKM: 87.2
Std RPKM: 347.7
Median RPKM: 652.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1836.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1616.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1536.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
1387.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1315.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1308.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1299.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1296.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1276.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1240.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1227.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1210.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1203.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1181.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1175.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1168.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1127.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1085.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1078.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1054.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1054.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1048.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1034.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
980.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
958.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
946.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
938.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
926.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
908.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
902.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
901.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
886.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
886.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
870.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
866.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
848.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
834.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
833.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
830.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
808.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
796.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
785.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
775.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
772.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
757.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
749.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
738.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
729.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
726.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
726.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
711.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
711.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
706.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
697.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
697.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
692.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
679.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
666.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
664.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
652.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
652.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
633.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
624.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
623.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
622.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
621.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
619.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
574.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
566.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
563.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
562.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
546.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
543.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
542.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
535.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
532.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
529.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
507.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
504.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
489.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
482.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
453.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
452.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
444.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
443.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
441.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
434.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
433.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
425.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
411.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
409.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
404.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
372.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
361.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
359.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
358.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
358.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
354.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
348.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
340.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
333.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
327.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
311.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
298.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
293.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
292.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
285.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
284.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
284.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
273.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
264.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
259.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
257.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
248.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
229.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
220.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
219.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
195.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
87.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.