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COLON - Expression summary
RNA expressioni
HPA:15.9TPM
GTEx:14.6RPKM
FANTOM5:99.7Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 15.9
overview Male, age 54 Sample 1
TPM: 12.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 19.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 18.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 12.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 18.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 20.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 14.6
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 18.5
Samples: 149

Max RPKM: 54.9
Min RPKM: 9.4
Std RPKM: 6.2
Median RPKM: 17.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 54.9
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 43.4
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 38.4
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 34.8
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 33.5
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 33.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 30.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 29.5
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 29.5
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 28.7
Show all
Colon - Transverse
RPKM: 11.6
Samples: 196

Max RPKM: 73.8
Min RPKM: 1.4
Std RPKM: 8.6
Median RPKM: 8.5
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 73.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 36.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 34.5
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 31.5
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 30.6
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 30.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 29.8
GTEX-ZY6K-1226-SM-5GZYL 50-59 years, male 29.3
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 28.7
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 28.7
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 99.7
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 76.1
FF:10014-101C5 62,83,84 years, mixed 99.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.