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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 463.7
Min RPKM: 17.6
Std RPKM: 93.2
Median RPKM: 123.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
463.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
404.0
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
379.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
331.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
317.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
300.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
296.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
294.5
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
294.2
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
282.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
277.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
265.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
260.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
233.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
231.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
222.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
219.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
213.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
204.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
204.1
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
201.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
201.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
200.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
199.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
198.9
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
194.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
189.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
187.2
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
179.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
176.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
174.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
169.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
168.8
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
160.6
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
159.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
154.1
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
151.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
150.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
144.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
139.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
131.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
130.0
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
129.1
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
128.2
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
126.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
125.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
124.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
123.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
123.4
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
115.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
109.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
107.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
104.9
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
101.6
GTEX-QCQG-1226-SM-48U23
50-59 years, female
100.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
99.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
99.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
99.7
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
99.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
97.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
95.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
93.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
89.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
89.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
81.1
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
80.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
79.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
79.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
78.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
78.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
76.5
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
73.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
67.9
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
67.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
56.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
53.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
51.4
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
51.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
49.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
47.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
47.3
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
43.6
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
43.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
41.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
40.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
39.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
39.1
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
34.8
GTEX-11I78-2026-SM-5987C
50-59 years, female
32.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
32.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
31.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
31.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
29.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
27.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
26.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
17.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.