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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 7.9
Min RPKM: 3.5
Std RPKM: 1.1
Median RPKM: 5.5
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
7.9
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
7.8
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
7.7
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
7.6
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
7.2
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
7.1
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
7.1
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
6.9
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
6.9
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
6.9
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
6.9
GTEX-Y111-2626-SM-4TT24
50-59 years, male
6.7
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
6.7
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
6.6
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
6.6
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
6.6
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
6.5
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
6.4
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
6.4
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
5.9
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
5.8
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
5.8
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
5.7
GTEX-13113-1526-SM-5EGHV
60-69 years, female
5.6
GTEX-13O21-1926-SM-5MR39
50-59 years, male
5.6
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
5.6
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
5.5
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
5.5
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
5.5
GTEX-X261-2426-SM-4PQZU
50-59 years, male
5.4
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
5.4
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
5.4
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
5.3
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
5.2
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
5.1
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
5.1
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
5.0
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
5.0
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
5.0
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
5.0
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
4.9
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
4.9
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
4.7
GTEX-11P82-0926-SM-5986X
20-29 years, male
4.6
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
4.6
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
4.5
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
4.5
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
4.3
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
4.3
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
4.3
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
4.2
GTEX-1445S-2926-SM-5O993
60-69 years, male
4.1
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
4.1
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
4.0
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
3.9
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
3.8
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
3.5
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.