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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 3956.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 4936.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4676.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 4944.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4278.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 6010.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 4269.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4685.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1391.1
Min RPKM: 143.4
Std RPKM: 273.1
Median RPKM: 759.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1391.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1383.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
1339.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1330.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1291.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1272.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1270.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1261.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1240.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1232.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1218.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1197.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1175.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
1116.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1110.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1097.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1097.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1095.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1089.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1084.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
1082.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1068.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1066.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
1058.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1052.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1037.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1033.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1009.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1003.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
991.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
984.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
978.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
954.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
939.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
920.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
918.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
917.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
907.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
904.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
898.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
896.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
893.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
892.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
879.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
851.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
850.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
845.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
841.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
836.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
832.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
828.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
824.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
821.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
820.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
810.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
790.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
785.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
783.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
771.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
759.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
750.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
740.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
739.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
731.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
727.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
726.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
720.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
706.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
705.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
694.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
686.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
679.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
665.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
662.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
658.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
654.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
651.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
651.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
651.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
648.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
636.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
636.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
632.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
617.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
607.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
595.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
592.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
591.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
586.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
574.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
568.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
557.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
551.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
546.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
532.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
528.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
519.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
516.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
513.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
513.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
502.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
501.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
497.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
484.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
464.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
460.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
454.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
426.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
420.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
412.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
412.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
388.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
378.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
370.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
364.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
361.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
333.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
315.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
143.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.