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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4914.7
Min RPKM: 5.4
Std RPKM: 1217.6
Median RPKM: 1006.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
4914.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
4802.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
4144.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
3950.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
3554.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
3521.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
3353.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
3233.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
3230.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
3102.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
3094.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
3054.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
2811.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
2804.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
2790.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
2602.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
2535.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
2444.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
2376.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
2368.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
2315.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
2279.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
2201.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
2149.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
2099.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
1955.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
1845.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
1671.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
1619.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
1608.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
1607.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
1570.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
1456.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1348.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
1330.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
1286.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
1279.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1167.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1157.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1144.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1092.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
1075.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
1037.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
1030.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
983.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
950.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
929.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
906.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
869.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
865.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
861.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
841.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
723.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
695.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
675.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
617.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
604.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
597.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
574.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
531.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
452.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
436.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
413.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
383.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
378.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
358.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
299.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
286.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
272.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
240.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
219.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
215.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
208.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
204.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
183.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
145.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
137.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
122.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
106.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
100.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
78.4
GTEX-1192X-2526-SM-59868
50-59 years, male
44.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
34.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
30.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
29.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
12.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
9.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
5.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.