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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 6194.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 13375.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 7353.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 9163.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 12695.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 10578.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 10860.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 10213
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 16077.2
Min RPKM: 254.3
Std RPKM: 4052.2
Median RPKM: 6254.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
16077.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
15849.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
15169.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
14825.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
14813.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
13758.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
13728.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
13426.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
13186.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
12642.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
12611.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
12373.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
12349.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
12220.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
12024.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
11871.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
11833.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
11712.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
11642.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
11479.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
11445.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
11146.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
10967.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
10928.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
10899.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
10864.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
10854.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
10729.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
10409.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
10117.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
10060.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
9921.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
9684.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
9630.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
9581.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
9574.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
9436.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
9252.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
9236.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
8998.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
8978.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
8869.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
8831.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
8824.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
8607.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
8602.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
8324.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
8221.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
7538.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
7526.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
7330.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
7326.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
6848.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
6717.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
6647.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
6469.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
6427.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
6361.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
6273.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
6254.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
6219.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
6180.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
6165.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
6118.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
5947.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
5937.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
5895.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
5863.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
5860.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
5785.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
5683.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
5447.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
5056.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
4978.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
4641.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
4627.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
4425.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
4391.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
4250.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
4227.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
4129.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
4064.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
4036.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
4025.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
4023.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
3893.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
3872.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
3787.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
3491.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
3294.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
3284.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
3147.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
3066.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
2913.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
2888.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2687.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
2542.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
2534.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
2266.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
2257.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
2181.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2175.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2156.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2110.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
2050.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1962.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
1699.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1644.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1628.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1519.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1464.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1439.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1387.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1339.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
1270.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1178.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
1071.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
904.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
254.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.