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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 2878.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 4978
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 3305.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3145.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3798.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 4319.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3897.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3634.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3982.2
Min RPKM: 65.1
Std RPKM: 720.8
Median RPKM: 1591.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
3982.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
3255.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
3218.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
2979.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2893.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2827.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
2748.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
2702.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
2688.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
2684.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2643.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
2582.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
2557.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
2547.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2507.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
2495.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2420.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
2360.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2343.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
2314.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
2281.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
2278.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2277.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
2254.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
2218.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2196.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2179.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
2172.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
2153.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
2126.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
2114.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
2104.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
2081.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2075.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2068.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
2064.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2052.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
2049.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
2013.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2011.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1958.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1944.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1934.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1931.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1927.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1896.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1859.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
1856.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1846.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
1840.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1803.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
1798.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1786.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1737.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1684.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1673.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1673.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1670.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1617.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1591.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1580.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1565.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1554.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1544.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1512.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1502.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1447.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1434.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1397.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1358.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1342.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1331.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1323.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1318.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1288.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1278.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1245.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
1222.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1220.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1210.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1203.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1201.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1199.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1191.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1158.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1151.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1113.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1054.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1024.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1024.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1017.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
981.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
978.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
939.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
923.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
918.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
904.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
896.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
886.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
876.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
861.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
861.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
821.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
800.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
757.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
753.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
744.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
684.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
641.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
639.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
626.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
609.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
595.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
582.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
567.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
517.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
517.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
489.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
65.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.