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COLON - Expression summary
RNA expressioni
HPA:8.8TPM
GTEx:7.4RPKM
FANTOM5:17.5Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 8.8
overview Male, age 54 Sample 1
TPM: 9.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 8.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 10
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 9.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 7.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 10
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 7.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 7.9
Samples: 149

Max RPKM: 12.9
Min RPKM: 3.3
Std RPKM: 1.8
Median RPKM: 7.9
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 12.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 12.5
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 11.9
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 11.4
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 11.4
GTEX-13111-1926-SM-5GCOL 50-59 years, male 11.3
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 11.2
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 11.1
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 11.1
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 11.0
Show all
Colon - Transverse
RPKM: 6.9
Samples: 196

Max RPKM: 12.2
Min RPKM: 3.0
Std RPKM: 1.7
Median RPKM: 6.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 12.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 12.1
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 11.6
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 11.0
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 10.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 10.7
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 10.6
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 10.6
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 10.5
GTEX-ZZ64-0726-SM-5GZX4 20-29 years, male 10.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 17.5
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 15.2
FF:10014-101C5 62,83,84 years, mixed 17.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.