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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 190.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 159.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 151.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 241.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 150.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 323.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 187.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 250
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 451.2
Min RPKM: 46.9
Std RPKM: 62.5
Median RPKM: 141.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
451.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
322.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
298.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
264.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
254.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
246.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
246.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
240.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
239.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
235.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
234.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
233.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
233.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
232.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
223.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
221.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
220.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
218.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
216.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
216.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
215.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
213.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
209.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
206.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
203.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
199.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
198.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
198.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
197.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
196.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
192.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
192.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
191.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
189.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
186.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
185.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
179.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
175.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
174.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
171.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
171.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
169.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
168.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
167.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
167.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
166.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
165.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
164.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
164.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
163.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
163.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
160.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
158.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
157.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
156.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
146.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
145.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
145.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
143.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
141.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
140.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
139.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
137.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
137.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
137.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
137.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
136.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
134.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
133.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
133.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
133.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
130.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
129.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
129.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
128.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
126.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
126.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
126.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
123.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
122.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
122.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
121.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
121.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
120.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
120.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
116.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
116.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
116.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
115.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
112.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
109.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
108.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
108.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
108.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
104.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
104.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
103.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
100.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
99.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
98.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
97.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
96.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
94.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
90.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
88.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
86.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
84.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
83.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
75.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
71.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
68.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
66.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
63.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
58.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
53.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
52.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
51.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
50.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
46.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.