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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 2281.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1247.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1438.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1659.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1425.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1600.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1410.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1952.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1020.6
Min RPKM: 46.0
Std RPKM: 181.8
Median RPKM: 415.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1020.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
904.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
835.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
809.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
785.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
778.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
751.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
751.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
731.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
709.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
709.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
708.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
702.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
699.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
669.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
665.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
658.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
657.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
641.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
641.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
630.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
629.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
613.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
609.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
607.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
598.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
582.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
576.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
569.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
554.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
554.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
550.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
547.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
541.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
536.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
528.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
519.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
500.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
496.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
479.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
475.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
472.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
472.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
466.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
463.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
463.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
461.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
454.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
452.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
445.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
445.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
442.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
442.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
433.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
433.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
429.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
425.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
424.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
423.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
415.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
408.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
406.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
406.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
405.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
403.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
399.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
394.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
394.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
391.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
387.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
385.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
385.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
383.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
376.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
373.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
365.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
364.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
359.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
358.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
345.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
344.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
339.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
338.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
338.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
334.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
332.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
332.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
331.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
329.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
328.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
325.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
325.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
308.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
308.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
304.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
299.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
295.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
289.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
285.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
278.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
278.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
271.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
253.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
250.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
245.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
239.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
231.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
220.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
211.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
203.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
185.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
178.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
170.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
152.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
151.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
137.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
115.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
114.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
46.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.