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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in tubules: 60 Cells in glomeruli: 20 Fibroblasts: 5 Other cell types: 15
Female, age 67
Sample 2 TPM: 22143.5
Cell types%
Cells in tubules: 70 Cells in glomeruli: 15 Fibroblasts: 10 Other cell types: 5
Female, age 55
Sample 3 TPM: 23670.5
Cell types%
Cells in tubules: 80 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 5
Male, age 46
Sample 4 TPM: 22133.3
Cell types%
Cells in tubules: 60 Cells in glomeruli: 25 Fibroblasts: 5 Other cell types: 10
Female, age 57
Sample 5 TPM: 37736.1
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 6 TPM: 21725.8
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 5 Other cell types: 20
Male, age 73
Sample 7 TPM: 16411.3
Cell types%
Cells in tubules: 60 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 20
Female, age 59
Sample 8 TPM: 20343.1
Cell types%
Cells in tubules: 65 Cells in glomeruli: 10 Fibroblasts: 10 Other cell types: 15
Female, age 48
Sample 9 TPM: 30520.9
Cell types%
Cells in tubules: 60 Cells in glomeruli: 5 Fibroblasts: 10 Other cell types: 25
KIDNEY - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 25101.7
Min RPKM: 826.9
Std RPKM: 6348.4
Median RPKM: 10739.5
GTEX-ZYFD-1526-SM-5NQ7T
50-59 years, male
25101.7
GTEX-Y5V6-2026-SM-5IFHO
60-69 years, male
21556.6
GTEX-P4QS-1126-SM-3NMD5
60-69 years, male
20914.0
GTEX-ZC5H-1726-SM-5HL7X
40-49 years, female
20646.5
GTEX-12WSG-0826-SM-5EQ5A
50-59 years, female
20538.0
GTEX-11GS4-2326-SM-5A5KS
60-69 years, male
18587.8
GTEX-13O1R-2526-SM-5N9FW
60-69 years, male
18351.2
GTEX-13OW6-1826-SM-5N9F9
50-59 years, male
18163.4
GTEX-11OF3-1326-SM-5N9FJ
60-69 years, male
17678.9
GTEX-1497J-0826-SM-5NQAJ
60-69 years, male
16756.8
GTEX-NPJ8-2226-SM-3TW8D
40-49 years, male
14062.5
GTEX-XPVG-0526-SM-4B65N
50-59 years, male
13447.5
GTEX-13OVL-1826-SM-5KLZR
50-59 years, male
13320.7
GTEX-ZYFG-1626-SM-5GZYY
60-69 years, female
12767.4
GTEX-QLQW-1626-SM-4R1K1
30-39 years, male
12017.1
GTEX-UPIC-1126-SM-4IHLO
20-29 years, female
10796.3
GTEX-ZVZP-0926-SM-5GIDB
50-59 years, male
10682.8
GTEX-T5JC-1526-SM-4DM68
20-29 years, male
10317.3
GTEX-12696-0926-SM-5FQTV
60-69 years, male
10182.1
GTEX-13112-2126-SM-5GCO4
50-59 years, male
8923.5
GTEX-QDVN-1626-SM-48TZC
50-59 years, male
8888.3
GTEX-147F4-2626-SM-5Q5CS
50-59 years, male
8582.5
GTEX-N7MS-1626-SM-3LK5F
60-69 years, male
7445.7
GTEX-145MN-0326-SM-5QGQI
30-39 years, male
6852.8
GTEX-13RTJ-2226-SM-5S2Q1
60-69 years, male
6110.2
GTEX-13OVI-1126-SM-5KLZF
60-69 years, female
6047.7
GTEX-1399S-0526-SM-5IJG8
30-39 years, female
6020.8
GTEX-RN64-1626-SM-48FD7
50-59 years, male
4506.4
GTEX-ZYT6-2226-SM-5GIC9
30-39 years, male
3575.6
GTEX-ZLFU-0926-SM-5P9F8
40-49 years, male
3485.4
GTEX-13NYB-1726-SM-5N9G2
40-49 years, male
2136.8
GTEX-11TTK-1926-SM-5PNW8
60-69 years, female
826.9
Show all
KIDNEY - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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