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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1437.7
Min RPKM: 73.9
Std RPKM: 255.2
Median RPKM: 263.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
1437.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
1388.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
1227.8
GTEX-1192X-2526-SM-59868
50-59 years, male
783.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
766.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
725.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
711.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
694.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
686.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
614.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
572.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
519.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
515.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
506.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
501.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
483.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
475.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
474.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
470.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
462.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
453.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
448.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
431.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
428.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
421.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
411.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
408.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
403.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
356.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
350.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
330.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
319.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
313.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
303.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
301.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
289.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
286.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
284.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
281.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
279.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
273.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
270.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
265.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
264.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
263.7
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
252.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
248.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
247.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
240.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
228.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
223.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
220.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
218.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
218.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
218.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
214.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
211.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
211.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
202.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
198.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
193.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
192.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
188.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
182.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
182.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
177.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
173.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
172.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
170.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
169.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
165.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
163.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
162.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
155.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
154.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
152.9
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
149.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
136.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
135.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
133.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
117.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
107.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
105.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
103.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
100.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
91.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
91.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
73.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.