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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1339
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1076.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1369.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1179.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1054.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 947.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 924.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1069.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 301.6
Min RPKM: 36.5
Std RPKM: 58.1
Median RPKM: 107.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
301.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
279.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
273.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
272.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
271.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
247.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
244.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
237.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
236.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
233.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
231.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
224.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
216.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
206.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
206.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
198.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
197.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
184.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
181.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
173.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
167.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
165.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
161.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
161.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
158.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
157.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
151.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
150.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
149.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
149.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
144.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
141.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
140.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
140.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
139.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
139.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
137.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
136.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
134.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
132.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
132.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
130.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
126.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
126.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
126.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
123.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
123.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
117.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
116.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
116.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
115.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
114.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
114.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
112.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
110.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
110.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
110.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
109.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
107.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
107.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
105.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
105.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
104.5
GTEX-YECK-1926-SM-4W21H
60-69 years, male
103.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
102.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
100.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
100.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
100.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
100.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
96.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
94.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
93.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
93.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
92.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
91.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
91.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
91.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
90.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
90.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
89.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
87.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
87.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
87.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
86.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
84.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
84.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
83.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
80.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
80.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
80.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
79.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
78.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
77.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
76.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
76.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
76.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
75.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
74.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
72.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
72.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
71.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
71.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
69.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
68.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
67.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
64.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
63.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
61.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
60.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
60.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
60.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
59.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
57.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
56.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
54.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
54.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
50.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
47.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
36.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.