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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 11525.5
Min RPKM: 0.2
Std RPKM: 3366.2
Median RPKM: 1901.2
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
11525.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
10410.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
10236.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
9984.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
9600.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
9366.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
9205.6
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
9093.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
9084.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
9061.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
8937.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
8647.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
8593.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
7627.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
7469.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
7383.6
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
7157.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
6809.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
6649.7
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
6377.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
6329.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
6267.9
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
6200.7
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
6084.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
5529.5
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
5045.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
5002.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
4948.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
4866.1
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
4776.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
4543.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
4399.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
4370.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
4052.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
3976.9
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
3827.7
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
3722.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
3696.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
3626.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
3393.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
3342.2
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
3271.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
3121.4
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
2773.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
2739.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
2686.7
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
2451.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
2010.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
1792.1
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1697.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
1559.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
1466.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1392.2
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
1304.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
1274.2
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
1146.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
1078.3
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
931.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
780.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
754.0
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
677.1
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
602.4
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
533.5
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
511.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
433.5
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
420.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
419.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
327.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
123.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
117.6
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
106.2
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
86.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
49.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
24.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
21.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
18.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
11.1
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
10.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
8.0
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
5.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
4.8
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
3.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
2.2
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
2.1
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
2.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
2.0
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
1.7
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
1.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
0.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
0.6
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
0.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
0.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
0.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
0.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
0.2
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.