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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 6.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 40.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 8.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 21.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 97.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 87.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 50.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 45.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 777.1
Min RPKM: 1.1
Std RPKM: 183.1
Median RPKM: 76.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
777.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
756.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
706.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
637.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
631.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
627.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
580.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
571.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
543.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
529.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
489.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
458.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
447.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
438.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
397.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
379.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
347.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
306.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
297.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
293.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
286.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
281.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
259.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
248.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
240.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
236.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
226.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
222.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
205.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
201.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
199.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
198.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
180.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
173.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
171.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
169.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
156.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
155.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
148.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
143.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
136.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
133.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
132.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
129.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
116.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
115.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
108.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
107.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
106.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
104.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
94.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
92.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
92.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
91.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
90.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
83.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
82.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
77.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
76.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
76.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
75.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
74.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
73.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
69.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
68.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
67.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
66.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
65.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
63.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
62.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
62.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
60.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
58.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
56.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
55.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
53.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
53.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
52.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
51.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
49.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
43.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
42.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
41.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
38.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
38.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
38.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
37.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
36.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
34.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
33.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
32.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
31.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
29.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
29.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
25.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
24.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
24.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
24.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
22.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
21.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
20.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
16.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
14.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
12.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
10.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
9.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
8.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
8.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
8.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
6.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
6.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
5.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
3.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
3.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
3.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
3.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
2.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
1.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
