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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 237.2
Min RPKM: 32.2
Std RPKM: 58.2
Median RPKM: 127.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
237.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
231.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
230.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
228.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
222.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
220.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
218.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
213.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
213.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
212.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
211.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
210.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
209.9
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
201.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
199.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
193.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
188.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
186.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
186.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
186.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
178.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
178.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
178.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
176.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
174.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
174.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
174.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
173.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
173.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
171.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
164.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
144.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
143.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
142.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
142.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
142.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
140.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
139.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
136.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
134.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
134.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
132.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
129.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
128.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
127.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
126.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
123.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
122.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
122.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
116.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
116.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
112.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
110.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
109.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
106.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
103.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
101.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
99.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
97.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
96.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
96.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
96.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
94.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
91.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
88.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
86.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
86.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
84.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
78.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
74.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
69.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
61.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
61.2
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
59.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
59.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
58.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
52.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
51.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
51.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
47.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
44.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
44.3
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
43.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
42.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
40.7
GTEX-1192X-2526-SM-59868
50-59 years, male
37.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
36.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
32.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.