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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 326.6
Min RPKM: 132.8
Std RPKM: 41.6
Median RPKM: 200.0
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
326.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
317.9
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
295.9
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
294.3
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
293.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
287.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
285.2
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
282.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
281.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
275.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
271.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
268.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
258.3
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
257.6
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
257.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
254.2
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
251.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
243.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
239.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
238.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
234.6
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
234.6
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
234.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
233.6
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
233.3
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
231.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
229.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
227.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
227.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
224.4
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
222.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
219.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
218.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
218.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
218.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
216.0
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
213.9
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
211.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
211.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
208.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
208.3
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
206.1
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
205.9
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
205.1
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
204.9
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
202.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
201.5
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
200.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
199.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
199.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
196.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
193.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
192.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
191.3
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
190.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
188.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
187.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
187.5
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
187.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
186.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
186.3
GTEX-11I78-2026-SM-5987C
50-59 years, female
186.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
186.1
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
186.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
185.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
184.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
184.0
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
183.1
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
182.2
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
181.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
180.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
180.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
179.6
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
179.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
178.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
178.3
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
178.2
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
174.1
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
173.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
173.3
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
170.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
169.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
169.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
168.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
166.2
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
162.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
159.4
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
158.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
157.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
157.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
157.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
149.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
149.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
146.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
143.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
132.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.