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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 269.1
Min RPKM: 73.0
Std RPKM: 43.3
Median RPKM: 133.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
269.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
262.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
255.7
GTEX-1192X-2526-SM-59868
50-59 years, male
229.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
229.0
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
226.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
212.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
204.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
203.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
199.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
198.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
198.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
194.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
191.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
190.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
182.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
180.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
180.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
179.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
178.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
172.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
168.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
168.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
165.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
165.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
165.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
157.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
155.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
154.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
153.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
152.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
150.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
149.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
148.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
148.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
147.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
146.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
141.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
140.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
137.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
136.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
136.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
136.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
133.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
133.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
132.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
131.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
131.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
129.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
128.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
128.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
126.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
125.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
124.0
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
123.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
123.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
122.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
122.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
120.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
117.9
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
117.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
117.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
117.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
116.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
115.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
111.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
110.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
110.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
110.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
109.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
109.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
109.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
108.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
107.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
102.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
101.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
100.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
99.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
95.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
95.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
89.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
89.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
84.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
81.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
80.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
80.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
74.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
73.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.