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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 687.5
Min RPKM: 109.4
Std RPKM: 121.1
Median RPKM: 291.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
687.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
614.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
550.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
530.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
529.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
514.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
504.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
502.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
495.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
480.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
477.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
473.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
467.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
461.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
460.3
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
447.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
445.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
443.3
GTEX-1192X-2526-SM-59868
50-59 years, male
436.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
436.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
423.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
420.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
420.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
409.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
389.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
378.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
370.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
361.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
353.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
344.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
343.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
341.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
340.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
338.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
333.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
331.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
314.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
311.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
308.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
307.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
300.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
299.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
295.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
295.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
288.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
287.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
286.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
273.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
273.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
265.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
263.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
262.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
259.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
259.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
255.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
251.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
251.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
248.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
243.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
238.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
225.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
225.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
222.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
217.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
216.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
216.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
216.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
215.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
214.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
213.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
210.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
209.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
208.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
207.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
205.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
204.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
200.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
200.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
200.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
192.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
190.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
186.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
169.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
162.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
158.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
134.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
109.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
109.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.