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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 405.4
Min RPKM: 69.6
Std RPKM: 59.8
Median RPKM: 190.7
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
405.4
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
289.9
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
274.2
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
265.2
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
260.1
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
259.0
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
253.2
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
245.9
GTEX-13113-1526-SM-5EGHV
60-69 years, female
243.6
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
242.7
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
234.1
GTEX-1445S-2926-SM-5O993
60-69 years, male
229.5
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
226.9
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
225.0
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
222.3
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
217.2
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
217.0
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
213.3
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
212.3
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
209.6
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
208.6
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
208.5
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
202.3
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
201.7
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
199.3
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
196.4
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
194.8
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
191.3
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
190.7
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
189.5
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
185.7
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
185.5
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
177.4
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
176.6
GTEX-13O21-1926-SM-5MR39
50-59 years, male
172.1
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
171.8
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
170.9
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
169.6
GTEX-11P82-0926-SM-5986X
20-29 years, male
160.2
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
158.9
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
155.7
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
151.1
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
148.0
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
147.4
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
143.1
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
128.9
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
120.5
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
116.5
GTEX-X261-2426-SM-4PQZU
50-59 years, male
115.3
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
114.7
GTEX-Y111-2626-SM-4TT24
50-59 years, male
113.5
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
111.9
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
109.3
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
107.3
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
86.5
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
71.6
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
69.6
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.