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COLON - Expression summary
RNA expressioni
HPA:0.8TPM
GTEx:12.8RPKM
FANTOM5:39.9Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 0.8
overview Male, age 54 Sample 1
TPM: 0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 12.8
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 15.5
Samples: 149

Max RPKM: 29.5
Min RPKM: 7.4
Std RPKM: 4.0
Median RPKM: 15.0
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 29.5
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 28.1
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 24.9
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 24.9
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 24.4
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 24.0
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 23.2
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 23.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 22.8
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 22.0
Show all
Colon - Transverse
RPKM: 10.7
Samples: 196

Max RPKM: 28.7
Min RPKM: 4.5
Std RPKM: 3.6
Median RPKM: 10.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 28.7
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 21.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 20.8
GTEX-S341-1426-SM-4AD6U 40-49 years, female 20.6
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 20.6
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 20.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 20.5
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 20.2
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 19.8
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 19.1
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 39.9
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 50.2
FF:10014-101C5 62,83,84 years, mixed 39.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.