We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 0.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 0
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 0
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 0
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 20.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 0
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 35.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 952.6
Min RPKM: 3.5
Std RPKM: 151.8
Median RPKM: 74.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
952.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
595.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
536.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
470.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
469.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
405.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
386.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
374.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
371.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
349.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
339.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
329.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
327.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
313.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
304.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
297.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
293.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
283.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
274.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
272.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
269.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
265.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
261.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
248.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
244.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
241.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
230.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
224.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
212.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
208.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
201.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
191.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
187.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
181.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
173.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
168.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
167.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
165.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
159.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
158.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
157.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
157.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
140.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
136.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
130.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
128.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
124.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
120.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
116.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
114.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
110.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
108.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
105.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
97.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
88.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
87.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
84.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
78.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
75.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
74.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
70.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
68.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
67.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
65.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
63.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
62.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
58.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
58.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
53.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
49.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
48.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
45.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
45.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
42.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
38.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
36.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
36.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
33.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
33.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
31.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
30.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
29.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
23.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
23.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
21.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
20.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
20.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
20.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
16.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
15.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
15.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
13.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
13.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
13.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
13.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
13.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
10.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
9.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
9.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
8.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
8.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
8.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
8.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
8.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
8.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
8.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
7.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
7.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
7.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
7.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
7.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
6.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
6.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
6.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
5.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
5.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
5.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
3.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
3.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.