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COLON - Expression summary
RNA expressioni
HPA:23.9TPM
GTEx:4.0RPKM
FANTOM5:6.9Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 23.9
overview Male, age 54 Sample 1
TPM: 22.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 32.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 14.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 37.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 35.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 15.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 20.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 41.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 23.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 4.0
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 0.2
Samples: 149

Max RPKM: 4.8
Min RPKM: 0.0
Std RPKM: 0.7
Median RPKM: 0.0
GTEX-V955-1726-SM-4JBHF 60-69 years, male 4.8
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 4.8
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 4.5
GTEX-XBED-1726-SM-47JYO 60-69 years, male 2.8
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.6
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 1.3
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 1.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 1.2
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 0.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 0.7
Show all
Colon - Transverse
RPKM: 6.9
Samples: 196

Max RPKM: 31.2
Min RPKM: 0.0
Std RPKM: 6.3
Median RPKM: 6.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 31.2
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 26.6
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 26.1
GTEX-PWCY-1026-SM-48TD4 20-29 years, female 24.2
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 23.2
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 22.1
GTEX-R55D-1826-SM-48FEF 50-59 years, male 20.9
GTEX-144GN-1126-SM-5LU33 50-59 years, male 19.9
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 19.4
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 19.3
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 6.9
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 6.2
FF:10014-101C5 62,83,84 years, mixed 6.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.