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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 41402.4
Min RPKM: 3736.7
Std RPKM: 7888.7
Median RPKM: 19372.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
41402.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
39234.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
34834.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
34715.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
34561.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
33267.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
33121.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
32961.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
32335.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
32058.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
31179.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
30889.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
30843.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
30835.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
29365.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
28527.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
28475.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
27993.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
27415.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
26768.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
26509.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
26351.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
26098.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
25922.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
25300.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
24919.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
24907.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
24124.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
24020.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
23768.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
23524.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
23399.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
23256.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
23142.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
23032.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
22526.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
22508.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
22329.2
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
22175.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
20823.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
20259.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
20049.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
19716.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
19380.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
19364.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
19161.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
19116.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
19000.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
18911.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
18868.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
18785.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
18701.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
18549.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
18531.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
18226.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
17981.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
17894.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
17803.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
17044.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
16304.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
16158.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
15867.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
15784.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
15632.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
15568.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
15528.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
15435.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
15388.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
15332.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
14788.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
14055.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
13386.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
12932.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
12866.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
12504.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
12322.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
12051.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
12040.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
11897.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
11726.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
11117.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
9908.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
9513.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
9472.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
7937.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
6587.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
5018.8
GTEX-1192X-2526-SM-59868
50-59 years, male
3736.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.