We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 10966.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 23463.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 40833.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 18930.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 17016.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 24225.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 29227.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 12978.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 75312.4
Min RPKM: 405.4
Std RPKM: 13356.9
Median RPKM: 22032.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
75312.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
50519.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
48087.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
47966.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
47621.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
47204.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
47007.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
46936.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
45513.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
44513.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
43688.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
42496.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
42413.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
41738.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
41522.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
41081.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
40720.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
40282.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
40192.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
39688.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
39579.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
38443.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
38399.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
37617.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
36955.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
36881.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
36736.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
36687.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
35706.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
35360.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
35311.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
35191.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
34591.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
34571.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
34395.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
33979.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
33694.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
33194.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
31282.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
30609.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
30530.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
30072.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
29468.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
29062.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
28376.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
28003.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
27822.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
27232.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
26999.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
25564.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
25119.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
24362.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
24249.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
23409.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
23403.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
23395.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
23020.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
22827.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
22313.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
22032.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
21953.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
21077.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
20422.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
20416.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
20173.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
20144.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
19327.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
18762.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
18688.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
18582.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
17703.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
17563.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
17294.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
16995.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
16876.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
16420.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
16142.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
15978.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
15466.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
15402.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
15371.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
15193.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
14791.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
14523.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
14332.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
13827.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
13118.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
12934.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
12234.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
12216.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
12146.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
12109.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
12062.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
11993.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
11956.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
11254.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
11207.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
11100.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
10867.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
10636.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
10619.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
10603.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
10436.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
10373.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
10362.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
10157.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
10153.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
10025.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
9893.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
9877.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
9780.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
9666.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
8762.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
8616.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
8092.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
7922.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
7266.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
6023.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
405.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.