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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 22085.3
Min RPKM: 621.1
Std RPKM: 4187.2
Median RPKM: 10930.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
22085.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
20709.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
19854.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
19563.0
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
18019.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
17772.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
17707.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
17122.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
16789.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
16687.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
16660.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
16524.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
15929.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
15804.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
15792.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
15602.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
15452.3
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
14879.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
14762.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
14464.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
14156.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
14006.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
14000.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
13914.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
13757.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
13524.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
13503.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
13394.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
13326.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
13299.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
12941.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
12647.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
12064.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
11918.9
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
11772.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
11766.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
11692.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
11677.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
11653.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
11433.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
11381.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
11308.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
10990.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
10937.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
10923.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
10798.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
10794.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
10706.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
10609.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
10542.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
10238.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
9971.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
9776.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
9729.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
9702.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
9619.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
9429.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
9247.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
9221.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
8921.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
8759.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
8736.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
8572.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
8560.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
8486.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
8338.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
8278.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
8029.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
7986.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
7894.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
7836.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
7709.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
7594.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
7549.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
7500.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
7401.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
7147.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
7087.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
7036.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
6782.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
6458.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
6070.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
5947.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
4926.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
3459.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
2741.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
2477.6
GTEX-1192X-2526-SM-59868
50-59 years, male
621.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.