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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 5345.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 8360
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 15214.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6100.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 5844.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 11705.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 11101.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3591.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 41451.1
Min RPKM: 692.9
Std RPKM: 6769.0
Median RPKM: 10324.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
41451.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
36612.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
26963.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
24900.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
24388.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
24087.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
24007.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
23245.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
23102.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
22330.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
22189.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
21870.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
21564.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
20840.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
20382.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
19931.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
19720.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
19120.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
18684.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
18484.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
18377.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
18080.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
17974.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
17817.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
17588.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
17460.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
16881.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
16767.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
16385.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
16335.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
16312.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
16134.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
16023.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
15792.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
15102.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
14925.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
14708.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
14410.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
14208.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
14156.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
14079.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
14045.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
14006.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
13973.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
13779.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
13072.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
12872.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
12753.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
12626.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
12583.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
12518.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
12352.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
11915.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
11621.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
11539.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
11421.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
11239.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
11174.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
11041.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
10324.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
10205.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
10201.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
10092.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
10068.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
10050.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
9910.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
9680.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
9518.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
9478.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
9374.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
8992.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
8970.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
8931.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
8764.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
8562.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
8553.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
8523.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
8307.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
8067.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
8003.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
7810.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
7681.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
7402.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
7371.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
7194.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
7107.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
7057.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
7019.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
6880.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
6799.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
6776.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
6773.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
6754.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
6667.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
6629.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
6446.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
6370.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
6315.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
6276.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
6227.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
6082.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
6069.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
6062.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
5817.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
5745.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
5566.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
5535.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
5383.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
5337.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
5324.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
5317.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
5206.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
5141.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
4876.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
4843.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
4328.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
3677.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2996.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
692.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.