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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 20214.6
Min RPKM: 757.4
Std RPKM: 4088.3
Median RPKM: 8042.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
20214.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
19115.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
18991.8
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
16235.6
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
15959.8
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
15191.4
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
14629.2
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
14625.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
14152.1
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
12806.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
12782.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
12773.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
12561.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
12508.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
12405.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
11821.7
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
11609.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
11488.3
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
11296.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
11230.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
11205.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
11204.1
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
11184.8
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
11056.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
10935.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
10620.5
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
10604.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
10526.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
10481.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
10360.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
10169.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
10065.8
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
9769.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
9592.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
9569.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
9450.8
GTEX-11I78-2026-SM-5987C
50-59 years, female
9439.5
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
9176.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
9106.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
8962.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
8943.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
8753.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
8655.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
8464.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
8262.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
8235.7
GTEX-S341-1226-SM-4AD5S
40-49 years, female
8200.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
8063.5
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
8022.1
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
7929.7
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
7752.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
7396.2
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
7225.8
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
7224.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
7070.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
7034.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
7003.9
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
6977.2
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
6822.6
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
6790.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
6727.9
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
6384.2
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
6246.6
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
6206.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
6177.7
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
6108.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
5806.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
5790.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
5789.8
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
5397.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
5219.0
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
5034.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
4753.7
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
4693.8
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
4658.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
4418.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
4276.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
4117.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
4041.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
4038.4
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
4000.5
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
3864.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
3561.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
3469.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
3455.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
3425.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
3246.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
3073.7
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
2993.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
2950.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
2938.9
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
2507.6
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1941.5
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
1621.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1432.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
757.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.