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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 41415.8
Min RPKM: 1770.7
Std RPKM: 7200.4
Median RPKM: 19853.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
41415.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
40417.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
38729.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
37332.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
35616.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
32571.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
31681.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
30183.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
28369.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
28123.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
27796.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
27490.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
27127.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
26739.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
25875.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
25837.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
25698.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
25682.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
25600.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
25447.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
25271.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
25169.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
24727.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
24513.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
24227.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
23927.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
23773.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
23115.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
22943.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
22748.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
22673.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
22287.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
22143.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
21938.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
21804.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
21594.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
21151.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
21053.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
20439.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
20365.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
20188.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
20138.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
19988.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
19900.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
19805.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
19612.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
19410.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
19267.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
18817.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
18696.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
18672.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
18289.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
18134.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
17808.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
17766.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
17593.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
17512.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
17457.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
17162.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
17075.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
16752.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
16706.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
16652.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
16252.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
16030.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
16008.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
16005.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
15989.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
15657.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
15549.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
15404.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
15291.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
15120.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
14868.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
14846.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
14716.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
13995.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
13948.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
12564.6
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
12370.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
12284.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
12228.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
11991.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
11132.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
9548.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
5870.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
4649.6
GTEX-1192X-2526-SM-59868
50-59 years, male
1770.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.