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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 11168
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 15134
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 32943.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 12385.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 13270.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 23222.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 26426.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 9995.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 115639.2
Min RPKM: 1951.2
Std RPKM: 18732.6
Median RPKM: 30094.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
115639.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
77217.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
70327.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
67067.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
66339.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
66013.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
61707.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
60730.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
60395.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
59748.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
58598.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
58396.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
57619.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
57345.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
57073.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
56540.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
56309.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
56245.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
55848.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
55364.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
55253.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
54281.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
53756.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
52935.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
52725.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
52654.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
51214.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
50709.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
49003.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
47750.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
47153.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
44839.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
44753.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
44329.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
44178.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
43169.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
42808.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
42215.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
41998.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
41586.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
41439.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
40978.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
39139.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
38752.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
38455.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
38344.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
38315.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
37722.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
37356.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
37303.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
37271.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
37141.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
35661.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
34489.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
34327.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
32879.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
32681.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
30731.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
30184.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
30094.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
28977.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
28682.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
28674.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
28182.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
27848.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
27759.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
27710.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
27247.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
25564.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
24850.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
24278.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
23658.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
23096.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
22907.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
22581.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
22348.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
21433.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
21283.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
21194.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
20254.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
19674.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
19341.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
18796.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
18572.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
18328.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
18163.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
18069.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
17950.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
17645.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
17362.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
17154.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
16870.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
16846.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
16486.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
16472.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
16435.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
16044.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
15954.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
15803.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
15720.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
15593.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
15486.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
15356.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
15133.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
14983.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
14422.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
14421.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
14386.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
14323.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
14017.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
13263.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
12683.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
12289.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
12145.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
11759.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
11322.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
10653.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
9771.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1951.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.