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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 17711.1
Min RPKM: 2842.0
Std RPKM: 2905.4
Median RPKM: 6907.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
17711.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
15101.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
15055.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
14491.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
13744.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
11854.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
11818.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
11272.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
11226.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
11035.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
10850.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
10834.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
10537.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
10361.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
9729.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
9398.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
9381.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
9371.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
9370.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
9295.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
9291.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
9122.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
9052.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
9049.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
9028.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
8832.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
8628.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
8501.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
8371.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
8268.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
8212.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
8186.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
7721.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
7682.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
7638.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
7564.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
7558.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
7455.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
7408.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
7393.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
7351.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
7138.9
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
6930.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
6908.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
6906.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
6757.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
6711.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
6604.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
6571.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
6377.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
6353.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
6232.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
6215.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
6197.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
6147.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
6088.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
6013.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
6010.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
5994.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
5918.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
5903.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
5850.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
5834.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
5812.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
5560.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
5458.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
5277.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
5275.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
5161.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
5151.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
5133.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
4930.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
4922.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
4908.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
4577.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
4573.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
4522.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
4262.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
4192.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
4043.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
4024.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
3937.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
3894.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
3778.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
3688.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
3123.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
3026.3
GTEX-1192X-2526-SM-59868
50-59 years, male
2842.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.