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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 9397.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 19017.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 28124.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 10012.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 9624.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 15325
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 14342.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 5186
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 39594.4
Min RPKM: 396.5
Std RPKM: 6188.3
Median RPKM: 8980.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
39594.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
29954.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
25536.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
24003.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
23858.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
21643.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
21503.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
20207.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
19853.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
19369.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
18546.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
18241.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
17802.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
17589.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
17216.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
16723.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
16417.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
16294.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
16136.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
15861.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
15364.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
15205.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
15118.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
14767.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
14356.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
14222.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
14040.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
13808.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
13746.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
13677.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
13477.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
12949.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
12809.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
12784.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
12670.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
12550.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
12437.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
12262.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
11803.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
11551.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
11435.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
11413.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
11187.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
11142.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
11039.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
10993.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
10562.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
10380.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
10241.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
10218.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
10039.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
9643.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
9572.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
9569.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
9344.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
9297.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
9171.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
9126.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
9005.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
8980.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
8817.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
8799.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
8580.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
8289.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
8283.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
8228.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
8176.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
7896.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
7687.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
7582.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
7406.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
7400.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
7273.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
7252.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
7043.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
6858.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
6774.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
6657.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
6521.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
6507.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
6439.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
6416.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
6359.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
6329.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
6284.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
6254.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
6230.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
6122.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
5777.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
5373.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
5360.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
5346.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
5275.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
5237.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
5182.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
5147.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
5131.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
5122.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
5013.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
4915.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
4878.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
4693.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
4442.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
4318.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
4266.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
4256.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
3984.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
3984.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
3926.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
3821.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
3815.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
3672.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
3645.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
3122.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
2936.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2800.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2677.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2097.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
396.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.