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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 19181.6
Min RPKM: 299.0
Std RPKM: 4157.0
Median RPKM: 6807.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
19181.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
18297.5
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
15596.0
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
13312.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
12700.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
12115.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
11708.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
11572.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
11524.1
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
11466.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
11303.5
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
11117.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
11026.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
10847.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
10792.6
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
10737.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
10698.0
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
10622.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
10480.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
10394.7
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
10311.4
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
10292.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
10062.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
9985.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
9711.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
9647.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
9639.9
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
9563.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
9406.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
9306.4
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
9250.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
8751.4
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
8705.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
8674.5
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
8623.2
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
8572.1
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
8443.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
8282.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
8056.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
7924.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
7883.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
7762.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
7627.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
7463.0
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
7257.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
7123.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
7042.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
6913.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
6701.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
6688.2
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
6634.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
6288.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
6063.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
5792.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
5736.5
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
5506.8
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
5255.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
5036.9
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
4875.0
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
4358.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
4140.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
3824.0
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
3492.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
3482.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
3461.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
3423.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
3410.2
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
3270.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
3157.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
3119.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
2991.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
2989.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
2916.6
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
2839.2
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
2762.8
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
2202.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
2123.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
2091.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
2079.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
2014.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
1986.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1936.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
1874.9
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
1633.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1579.5
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
1394.1
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
1275.7
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
1205.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1176.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
1108.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1104.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
990.0
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
964.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
916.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
359.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
299.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.