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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 48784.4
Min RPKM: 1051.6
Std RPKM: 10154.4
Median RPKM: 23156.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
48784.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
47207.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
45938.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
45425.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
41282.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
41274.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
40783.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
37415.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
37394.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
36716.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
36570.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
35872.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
33355.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
33235.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
31790.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
31753.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
31630.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
31506.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
30695.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
30318.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
29912.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
28646.7
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
28597.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
28375.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
27868.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
27485.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
27129.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
26767.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
26506.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
26202.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
26176.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
26102.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
25517.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
25322.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
25177.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
25154.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
25125.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
24759.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
24532.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
24102.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
23984.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
23571.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
23549.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
23293.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
23019.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
22929.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
22817.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
22713.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
22608.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
21729.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
21533.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
20854.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
20593.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
20568.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
19894.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
19784.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
19744.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
19267.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
18834.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
18716.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
18655.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
18139.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
17250.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
17090.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
17063.0
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
16730.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
16698.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
16648.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
16260.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
16237.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
16046.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
15914.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
15637.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
15447.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
15196.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
14969.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
14834.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
12672.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
12442.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
10968.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
10933.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
10686.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
10287.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
3061.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1726.1
GTEX-1192X-2526-SM-59868
50-59 years, male
1434.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1080.6
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1051.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.