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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 15860.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 31344.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 53395.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 23292.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 21354.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 29628
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 37408.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 17616.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 93154.7
Min RPKM: 1068.9
Std RPKM: 14052.5
Median RPKM: 21106.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
93154.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
62275.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
56935.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
52765.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
51019.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
50017.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
47156.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
45415.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
45308.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
43444.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
42785.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
42395.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
41914.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
40176.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
40057.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
39591.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
39494.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
38876.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
38756.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
38465.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
38162.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
37963.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
37883.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
37475.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
37337.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
36857.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
35625.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
35599.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
34959.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
34880.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
34767.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
33636.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
32906.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
32767.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
32369.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
32271.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
32134.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
32132.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
30896.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
27286.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
27037.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
26289.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
26162.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
26090.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
25316.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
24890.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
24700.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
24536.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
24423.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
24318.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
23592.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
23226.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
22846.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
22806.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
22690.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
22183.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
22105.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
21830.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
21621.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
21106.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
20537.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
20431.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
20300.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
20209.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
20157.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
20117.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
19621.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
19166.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
18553.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
18438.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
18248.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
18115.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
18048.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
17835.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
17493.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
17383.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
16921.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
16401.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
16227.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
16139.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
16086.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
16080.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
15839.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
15775.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
15478.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
15231.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
14951.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
14816.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
14803.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
14496.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
14478.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
14021.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
13972.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
13791.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
13688.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
13581.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
13533.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
13520.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
13269.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
13228.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
12531.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
12199.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
12029.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
11900.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
11097.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
10790.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
9357.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
9250.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
9237.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
9047.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
8973.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
8650.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
8198.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
7212.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
6728.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
6680.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
5611.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
2907.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1068.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.