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RNA category is based on mRNA expression levels in the analyzed samples (RNA assay description). The categories include: tissue enriched, group enriched, tissue enhanced, expressed in all, mixed and not detected. RNA category is calculated separately for data imported from The Genotype-Tissue Expression project (GTEX), FANTOM5 Consortium (FANTOM5) and internally generated Human Protein Atlas (HPA) data.
Protein evidence scores are generated from several independent sources and are classified as evidence at i) protein level, ii) transcript level, iii) no evidence, or iv) not available.
Evidence at protein level
Protein expressioni
A summary of the overall protein expression pattern across the analyzed normal tissues. The summary is based on knowledge-based annotation.
"Estimation of protein expression could not be performed. View primary data." is shown for genes analyzed with a knowledge-based approach where available RNA-seq and gene/protein characterization data has been evaluated as not sufficient in combination with immunohistochemistry data to yield a reliable estimation of the protein expression profile.
Standardized explanatory sentences with additional information required for full understanding of the knowledge-based expression profile.
Antibody staining mainly consistent with RNA expression data.
Reliability scorei
Reliability score (score description), divided into Enhanced, Supported, Approved, or Uncertain, is evaluated in normal tissues and based on consistency between antibody staining pattern, available RNA-Seq and gene/protein characterization data, as well as similarity between independent antibodies targeting the same protein.
Below is an overview of RNA and protein expression data generated in the Human Protein Atlas project. Analyzed tissues are divided into color-coded groups according to which functional features they have in common. For each group, a list of included tissues is accessed by clicking on group name, group symbol, RNA bar, or protein bar. Subsequent selection of a particular tissue in this list links to the image data page.
Images of selected tissues give a visual summary of the protein expression profile furthest to the right.
The gray human body provides links to a histology dictionary when clicking on any part of the figure.
RNA expression (TPM)i
RNA-seq results generated in HPA are reported as number of transcripts per million (TPM). Each bar represents the highest expression score found in a particular group of tissues. The assay is described more in detail in Assays & Annotation.
Protein expression (score)i
Each bar represents the highest expression score found in a particular group of tissues. Protein expression scores are based on a best estimate of the "true" protein expression from a knowledge-based annotation, described more in detail under Assays & annotation. For genes where more than one antibody has been used, a collective score is set displaying the estimated true protein expression.
Protein expression data is shown for each of the 44 tissues. Color-coding is based on tissue groups, each consisting of tissues with functional features in common. Mouse-over function shows protein score for analyzed cell types in a selected tissue. To access image data click on tissue name or bar. Annotation of protein expression is described in detail in Assays & annotation.
For genes with available protein data for which a knowledge-based annotation gave inconclusive results, no protein expression data is displayed in the protein expression data overview. However, all immunohistochemical images are still available and the annotation data can be found under Primary data.
Organ
Expression
Alphabetical
RNA EXPRESSION OVERVIEWi
RNA expression overview shows RNA-data from three different sources: Internally generated Human Protein Atlas (HPA) RNA-seq data, RNA-seq data from the Genotype-Tissue Expression (GTEx) project and CAGE data from FANTOM5 project. Color-coding is based on tissue groups, each consisting of tissues with functional features in common. To access sample data, click on tissue name or bar.
HPA dataseti
HPA dataset RNA-seq tissue data is reported as mean TPM (transcripts per million), corresponding to mean values of the different individual samples from each tissue. Color-coding is based on tissue groups, each consisting of tissues with functional features in common. To access sample data, click on tissue name or bar. The RNA-seq assay is described in detail in Assays & Annotation.
RNA tissue category HPA HPA RNA tissue category (category description) is calculated based on mRNA expression levels across all tissues and include: tissue enriched, group enriched, tissue enhanced, expressed in all, mixed and not detected.
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataseti
GTEx dataset RNA-seq data is reported as median RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found in Assays & Annotation.
RNA tissue category GTEx GTEx RNA tissue category (category description) is calculated based on mRNA expression levels across all tissues and include: tissue enriched, group enriched, tissue enhanced, expressed in all, mixed and not detected.
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataseti
FANTOM5 dataset Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found in Assays & Annotation.
RNA tissue category FANTOM5 FANTOM5 RNA tissue category (category description) is calculated based on gene expression levels across all tissues and include: tissue enriched, group enriched, tissue enhanced, expressed in all, mixed and not detected.
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GENE INFORMATIONi
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Gene name
MTOR (HGNC Symbol)
Synonyms
FLJ44809, FRAP, FRAP1, FRAP2, RAFT1, RAPT1
Description
Mechanistic target of rapamycin (HGNC Symbol)
Entrez gene summary
The protein encoded by this gene belongs to a family of phosphatidylinositol kinase-related kinases. These kinases mediate cellular responses to stresses such as DNA damage and nutrient deprivation. This protein acts as the target for the cell-cycle arrest and immunosuppressive effects of the FKBP12-rapamycin complex. The ANGPTL7 gene is located in an intron of this gene. [provided by RefSeq, Sep 2008]
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Under the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
MTOR-001
MTOR-002
MTOR-005
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Enzymes ENZYME proteins Transferases Kinases Atypical kinases Predicted intracellular proteins Plasma proteins Cancer-related genes Mutated cancer genes Mutational cancer driver genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Nonsense Mutations COSMIC Missense Mutations Disease related genes FDA approved drug targets Small molecule drugs Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane] GO:0000166 [nucleotide binding] GO:0001030 [RNA polymerase III type 1 promoter DNA binding] GO:0001031 [RNA polymerase III type 2 promoter DNA binding] GO:0001032 [RNA polymerase III type 3 promoter DNA binding] GO:0001156 [TFIIIC-class transcription factor binding] GO:0001932 [regulation of protein phosphorylation] GO:0001933 [negative regulation of protein phosphorylation] GO:0001934 [positive regulation of protein phosphorylation] GO:0001938 [positive regulation of endothelial cell proliferation] GO:0003007 [heart morphogenesis] GO:0003179 [heart valve morphogenesis] GO:0004672 [protein kinase activity] GO:0004674 [protein serine/threonine kinase activity] GO:0005515 [protein binding] GO:0005524 [ATP binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005737 [cytoplasm] GO:0005739 [mitochondrion] GO:0005741 [mitochondrial outer membrane] GO:0005764 [lysosome] GO:0005765 [lysosomal membrane] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0005794 [Golgi apparatus] GO:0005829 [cytosol] GO:0005942 [phosphatidylinositol 3-kinase complex] GO:0005979 [regulation of glycogen biosynthetic process] GO:0006109 [regulation of carbohydrate metabolic process] GO:0006112 [energy reserve metabolic process] GO:0006207 ['de novo' pyrimidine nucleobase biosynthetic process] GO:0006468 [protein phosphorylation] GO:0006950 [response to stress] GO:0007050 [cell cycle arrest] GO:0007165 [signal transduction] GO:0007281 [germ cell development] GO:0007420 [brain development] GO:0007569 [cell aging] GO:0007584 [response to nutrient] GO:0007616 [long-term memory] GO:0008542 [visual learning] GO:0009791 [post-embryonic development] GO:0010507 [negative regulation of autophagy] GO:0010592 [positive regulation of lamellipodium assembly] GO:0010628 [positive regulation of gene expression] GO:0010831 [positive regulation of myotube differentiation] GO:0010942 [positive regulation of cell death] GO:0010976 [positive regulation of neuron projection development] GO:0012505 [endomembrane system] GO:0014042 [positive regulation of neuron maturation] GO:0014736 [negative regulation of muscle atrophy] GO:0016020 [membrane] GO:0016049 [cell growth] GO:0016236 [macroautophagy] GO:0016242 [negative regulation of macroautophagy] GO:0016301 [kinase activity] GO:0016310 [phosphorylation] GO:0016605 [PML body] GO:0016740 [transferase activity] GO:0018105 [peptidyl-serine phosphorylation] GO:0018107 [peptidyl-threonine phosphorylation] GO:0019901 [protein kinase binding] GO:0019904 [protein domain specific binding] GO:0021510 [spinal cord development] GO:0030030 [cell projection organization] GO:0030163 [protein catabolic process] GO:0030425 [dendrite] GO:0030838 [positive regulation of actin filament polymerization] GO:0031090 [organelle membrane] GO:0031295 [T cell costimulation] GO:0031397 [negative regulation of protein ubiquitination] GO:0031529 [ruffle organization] GO:0031641 [regulation of myelination] GO:0031669 [cellular response to nutrient levels] GO:0031929 [TOR signaling] GO:0031931 [TORC1 complex] GO:0031932 [TORC2 complex] GO:0031998 [regulation of fatty acid beta-oxidation] GO:0032095 [regulation of response to food] GO:0032868 [response to insulin] GO:0032956 [regulation of actin cytoskeleton organization] GO:0032991 [macromolecular complex] GO:0035176 [social behavior] GO:0035264 [multicellular organism growth] GO:0038202 [TORC1 signaling] GO:0040007 [growth] GO:0042060 [wound healing] GO:0042220 [response to cocaine] GO:0043022 [ribosome binding] GO:0043025 [neuronal cell body] GO:0043087 [regulation of GTPase activity] GO:0043200 [response to amino acid] GO:0043231 [intracellular membrane-bounded organelle] GO:0043276 [anoikis] GO:0043278 [response to morphine] GO:0043610 [regulation of carbohydrate utilization] GO:0044877 [macromolecular complex binding] GO:0045429 [positive regulation of nitric oxide biosynthetic process] GO:0045670 [regulation of osteoclast differentiation] GO:0045727 [positive regulation of translation] GO:0045792 [negative regulation of cell size] GO:0045859 [regulation of protein kinase activity] GO:0045945 [positive regulation of transcription from RNA polymerase III promoter] GO:0046777 [protein autophosphorylation] GO:0046889 [positive regulation of lipid biosynthetic process] GO:0048015 [phosphatidylinositol-mediated signaling] GO:0048255 [mRNA stabilization] GO:0048661 [positive regulation of smooth muscle cell proliferation] GO:0048714 [positive regulation of oligodendrocyte differentiation] GO:0048738 [cardiac muscle tissue development] GO:0050731 [positive regulation of peptidyl-tyrosine phosphorylation] GO:0050769 [positive regulation of neurogenesis] GO:0050882 [voluntary musculoskeletal movement] GO:0051219 [phosphoprotein binding] GO:0051496 [positive regulation of stress fiber assembly] GO:0051534 [negative regulation of NFAT protein import into nucleus] GO:0051896 [regulation of protein kinase B signaling] GO:0051897 [positive regulation of protein kinase B signaling] GO:0055006 [cardiac cell development] GO:0055013 [cardiac muscle cell development] GO:0060048 [cardiac muscle contraction] GO:0060135 [maternal process involved in female pregnancy] GO:0060252 [positive regulation of glial cell proliferation] GO:0060999 [positive regulation of dendritic spine development] GO:0061051 [positive regulation of cell growth involved in cardiac muscle cell development] GO:0071456 [cellular response to hypoxia] GO:0090335 [regulation of brown fat cell differentiation] GO:0090559 [regulation of membrane permeability] GO:1900034 [regulation of cellular response to heat] GO:1901216 [positive regulation of neuron death] GO:1901838 [positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter] GO:1904000 [positive regulation of eating behavior] GO:1904056 [positive regulation of cholangiocyte proliferation] GO:1904058 [positive regulation of sensory perception of pain] GO:1904193 [negative regulation of cholangiocyte apoptotic process] GO:1904197 [positive regulation of granulosa cell proliferation] GO:1904206 [positive regulation of skeletal muscle hypertrophy] GO:1904213 [negative regulation of iodide transmembrane transport]
Predicted intracellular proteins Cancer-related genes Mutated cancer genes Mutational cancer driver genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Nonsense Mutations COSMIC Missense Mutations Protein evidence (Ezkurdia et al 2014)