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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 572.6
Min RPKM: 102.9
Std RPKM: 99.9
Median RPKM: 312.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
572.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
555.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
520.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
484.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
468.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
466.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
448.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
446.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
442.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
442.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
439.1
GTEX-1192X-2526-SM-59868
50-59 years, male
436.9
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
419.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
418.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
414.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
412.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
402.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
402.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
402.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
392.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
389.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
386.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
379.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
377.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
376.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
374.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
368.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
365.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
362.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
358.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
355.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
353.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
348.8
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
346.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
338.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
336.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
335.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
331.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
330.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
329.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
324.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
321.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
319.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
314.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
311.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
303.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
297.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
296.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
290.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
286.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
279.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
277.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
272.5
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
271.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
264.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
257.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
257.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
254.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
249.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
249.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
248.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
247.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
247.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
247.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
246.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
242.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
242.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
241.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
236.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
234.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
234.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
232.8
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
230.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
221.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
209.4
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
201.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
196.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
194.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
191.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
181.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
167.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
165.8
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
163.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
153.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
147.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
139.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
134.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
102.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.